PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_10543
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 224aa    MW: 23412.1 Da    PI: 10.3345
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_10543genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-194797256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f taeeAa+a+++a++ l+g+
  PEQU_10543 47 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFSTAEEAARAYDRAALILYGH 97
                59****999.**********954...5***********************99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-3547110IPR001471AP2/ERF domain
PROSITE profilePS5103222.70847104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-3047104IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2147104IPR016177DNA-binding domain
PfamPF008472.8E-134796IPR001471AP2/ERF domain
CDDcd000183.30E-3247106No hitNo description
PRINTSPR003674.9E-114859IPR001471AP2/ERF domain
PRINTSPR003674.9E-117086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDSSSTQSSP IEQCSLSHPN SPTSSGSSGG TRKVSRGKGG PDNSKFRYRG VRQRSWGKWV  60
AEIREPRKRT RKWLGTFSTA EEAARAYDRA ALILYGHRAQ LNLQPSGCGN STAGSHTRNS  120
SSASSSTSSS TTTLRPLLPR PSGFPLPILP YTYPSVPYTY PTQVVPTAAM NLPAGSEEMN  180
SLVGSMSSGL SISCPPQGSS EVGLAAAGME NIPATPSMGG GGGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1748103359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392069.16e-49PREDICTED: ethylene-responsive transcription factor ABI4-like
SwissprotA0MES81e-36ABI4_ARATH; Ethylene-responsive transcription factor ABI4
TrEMBLM0SDC71e-49M0SDC7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P10100_0013e-49(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133032632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.19e-28ERF family protein